.. _EnzoPrimaryReferences:

Enzo Primary References
=======================

The Enzo method paper is not yet complete. However, there are several papers
that describe the numerical methods used in Enzo, and this documentation
contains a brief outline of the essential physics in Enzo, in
:ref:`EnzoAlgorithms`.  Two general references (that should be considered to
stand in for the method paper) are:


*  `Introducing Enzo, an AMR Cosmology Application <http://adsabs.harvard.edu/cgi-bin/bib_query?arXiv:astro-ph/0403044>`_
   by **O'Shea et al.** In "Adaptive Mesh Refinement - Theory and
   Applications," Eds. T. Plewa, T. Linde & V. G. Weirs, Springer
   Lecture Notes in Computational Science and Engineering, 2004.
   `Bibtex entry <http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=2004astro.ph..3044O&data_type=BIBTEX&db_key=PRE&nocookieset=1>`_
*  `Simulating Cosmological Evolution with Enzo <http://adsabs.harvard.edu/cgi-bin/bib_query?arXiv:0705.1556>`_
   by **Norman et al.** In "Petascale Computing: Algorithms and
   Applications," Ed. D. Bader, CRC Press LLC, 2007.
   `Bibtex entry <http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=2007arXiv0705.1556N&data_type=BIBTEX&db_key=PRE&nocookieset=1>`_

Three somewhat older conferences proceedings are also relevant:


*  `Simulating X-Ray Clusters with Adaptive Mesh Refinement <http://adsabs.harvard.edu/abs/1997ASPC..123..363B>`_
   by **Bryan and Norman.** In "Computational Astrophysics; 12th
   Kingston Meeting on Theoretical Astrophysics;" proceedings of
   meeting held in Halifax; Nova Scotia; Canada October 17-19; 1996,
   ASP Conference Series #123, edited by D. A. Clarke and M. J. West.,
   p. 363.
   `Bibtex entry <http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1997ASPC..123..363B&data_type=BIBTEX&db_key=AST&nocookieset=1>`_
*  `A Hybrid AMR Application for Cosmology and Astrophysics <http://adsabs.harvard.edu/abs/1997astro.ph.10187B>`_
   by **Bryan and Norman.** In "Workshop on Structured Adaptive Mesh
   Refinement Grid Methods", Mar. 1997, ed. N. Chrisochoides.
   `Bibtex entry <http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1997astro.ph.10187B&data_type=BIBTEX&db_key=PRE&nocookieset=1>`_
*  `Cosmological Adaptive Mesh Refinement <http://adsabs.harvard.edu/abs/1999ASSL..240...19N>`_
   by **Norman and Bryan.** In "Numerical Astrophysics : Proceedings
   of the International Conference on Numerical Astrophysics 1998
   (NAP98)," held at the National Olympic Memorial Youth Center,
   Tokyo, Japan, March 10-13, 1998. Edited by Shoken M. Miyama, Kohji
   Tomisaka, and Tomoyuki Hanawa. Boston, Mass. : Kluwer Academic,
   1999. (Astrophysics and space science library ; v. 240), p.19
   `Bibtex entry <http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1999ASSL..240...19N&data_type=BIBTEX&db_key=AST&nocookieset=1>`_

The primary hydrodynamics methods are PPM and ZEUS, as described in
the following two papers:


* `The Piecewise Parabolic Method (PPM) for Gas-Dynamical Simulations
  <http://adsabs.harvard.edu/abs/1984JCoPh..54..174C>`_ by Colella, P.; Woodward, Paul R.
  Journal of Computational Physics (ISSN 0021-9991), vol. 54, April 1984,
  p. 174-201.  `Bibtex entry
  <http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1984JCoPh..54..174C&data_type=BIBTEX&db_key=AST&nocookieset=1>`_

*  `ZEUS-2D: A radiation magnetohydrodynamics code for astrophysical flows in
   two space dimensions. I - The hydrodynamic algorithms and tests.
   <http://adsabs.harvard.edu/abs/1992ApJS...80..753S>`_ by Stone and Norman,
   Astrophysical Journal Supplement Series (ISSN 0067-0049), vol. 80, no. 2,
   June 1992, p. 753-790. 
   `Bibtex Entry <http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1992ApJS...80..753S&data_type=BIBTEX&db_key=AST&nocookieset=1>`_

The extension of PPM to cosmology can be found here:

*  `A piecewise parabolic method for cosmological hydrodynamics.
   <http://adsabs.harvard.edu/abs/1995CoPhC..89..149B>`_ by Bryan et al. Comput.
   Phys. Commun., Vol. 89, No. 1 - 3, p. 149 - 168 `Bibtex entry
   <http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1995CoPhC..89..149B&data_type=BIBTEX&db_key=AST&nocookieset=1>`_

The AMR method used in Enzo can be found here:

* `Local adaptive mesh refinement for shock hydrodynamics
  <http://adsabs.harvard.edu/abs/1989JCoPh..82...64B>`_   by Berger, M. J. and
  Colella, P. Journal of Computational Physics (ISSN 0021-9991), vol. 82, May
  1989, p. 64-84.  `Bibtex Entry
  <http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1989JCoPh..82...64B&data_type=BIBTEX&db_key=PHY&nocookieset=1>`_.

The YT papers can be found here:

* M Turk, `Analysis and Visualization of Multi-Scale Astrophysical Simulations
  Using Python and NumPy
  <http://conference.scipy.org/proceedings/SciPy2008/paper_11/>`_ in Proceedings
  of the 7th Python in Science conference (!SciPy 2008), G Varoquaux, T Vaught, J
  Millman (Eds.), pp. 46-50 (`Bibtex entry <http://yt.enzotools.org/wiki/Citation>`_)

* `yt: A Multi-code Analysis Toolkit for Astrophysical Simulation Data
  <http://adsabs.harvard.edu/abs/2011ApJS..192....9T>`_, by Turk, M. J.;
  Smith, B. D.; Oishi, J. S.; Skory, S.; Skillman, S. W.; Abel, T.; and 
  Norman, M. L. The Astrophysical Journal Supplement, Volume 192, Issue 1,
  article id. 9 (2011)
  `Bibtex Entry <http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=2011ApJS..192....9T&data_type=BIBTEX&db_key=AST&nocookieset=1>`_.